Plant MITE

SE2830067

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9072
Sorghum bicolor
SE2830067
hAT
Hat6
chromosome_10:19761955-19762138
CCTCCCGT
GTCAGTGGCGGAGGACAGGTA

Secondary structure and sequence

TSD TIR

5'

3'

CCTCCC T           G  -A    AAAAACA          ---AA  -    -  ---- AGATTGATTACTTGCACAAAAATTAAGAACTAA
      G CAGTGGCGGAG AC  GGTA       AGGTGTGGCA     GA GTGA CA    A                                 
      | ||||||||||| ||  ||||       ||||||||||     || |||| ||    |                                  
      C GTCACCGCCTC TG  CCAT       TCCACACCGT     GT TGGA TT    C                                 
TGCCCT C           G  AG    --CCCGA          CGACG  A    G  TAAA TAAGTAAGAAGAAATAGGTCCAACACAGTATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830067

CCTCCCGTCAGTGGCGGAGGACAGGTAAAAAACAAGGTGTGGCAAAGAGTGACAAAGATTGATTACTTGCACAAAAATTAAGAACTAACATATGACACAACCTGGATAAAGAAGAATGAATCAAATTTGAGGTATGGCAGCTGCCACACCTAGCCCTACCGAGTGCTCCGCCACTGCCTCCCGT

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