SE2850068

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9073
  • Sorghum bicolor
  • SE2850068
  • PIF/harbinger
  • To3
  • chromosome_1:71165286-71165536
  • TCA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TC               CACTCCAAAACCCAAA    T ---------    GATTCCCTGTTACATCGAATCTTGCGGCACATGCATGGAACATTAAATATAGATTAAAAAAAAATAACTAATTGCACAGTTTG
  AGGCCTTGTTTAGTT                AACT T         TCAA                                                                                   
  |||||||||||||||                |||| |         ||||                                                                                    
  TCCGGAACAAATCAA                ACTT T         CATG                                                                                   
AC               ---------CTCCTCC    - TCAAAAACC    ACATCGTGAAAGTAAAAATAAACCATTAATAACAGGTTGGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCGTTTAATGTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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