SE2850069

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9074
  • Sorghum bicolor
  • SE2850069
  • PIF/harbinger
  • To16
  • chromosome_9:44901941-44902152
  • TAA
  • AGGGCACTCACAATGCAGACTCTATCATAGAGTCTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 -                    AGTT   T     CTCGAACAA     --ACT     TCTAAATAAGACTTGGAGTCTTATTTTTTCT
  AGGGCACTCACAATGCA GACTCTATCATAGAGTCTAA    ATT ATTAC         TGTGG     TAGAG                               
  ||||||||||||||||| ||||||||||||||||||||    ||| |||||         |||||     |||||                                
  TCCCGTGAGTGTTACGT CTGAGATAGTATCTCAGGTT    TAA TAATG         ATACC     ACGAC                               
AA                 T                    CTGT   T     -TATAATAA     ATAAA     TACACCGTCGTATAAATAACTTCATTCTCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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