Plant MITE

SE2810070

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9075
Sorghum bicolor
SE2810070
Tc1/Mariner
St6
chromosome_7:60546530-60546790
TA
TACTCCCTCCATCCCTGAAAGCTTCAACTCCTAGA

Secondary structure and sequence

TSD TIR

5'

3'

         CA            T   CTC     ATCCG    ---       A    TT            C            ---------------        TATCTA      AAAAT  -G    T  T   AAT
TACTCCCTC  TCCCTGAAAGCT CAA   CTAGA     TGTC   GGTCAAA TTTT  AACTTTGACTAA TTTATAGAAAAG               AGTATCAA      TGATAT     GA  TATC TA GAA   
|||||||||  |||||||||||| |||   |||||     ||||   ||||||| ||||  |||||||||||| ||||||||||||               ||||||||      ||||||     ||  |||| || |||    
ATGAGGGAG  AGGGACTTTCGA GTT   GATTT     ACAG   TCAGTTT AAAA  TTGAAACTGGTT AAATATCTTTTT               TCATGGTT      ATTATA     CT  ATAG AT CTT   
         AC            C   AAA     ---CA    GAT       G    TT            T            TTGCGATTCTAAATA        ----TA      GTAAT  AA    T  -   ATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810070

TACTCCCTCCATCCCTGAAAGCTTCAACTCCTAGAATCCGTGTCGGTCAAAATTTTTTAACTTTGACTAACTTTATAGAAAAGAGTATCAATATCTATGATATAAAATGAGTATCTTATGAAAATATATTCTATGATAAATCTAATGATATTAATTTGGTACTATAAATCTTAGCGTTTTTTTCTATAAATTTGGTCAAAGTTTTAAAAGTTTGACTTAGGACAACTTTAGAAATTGCAGCTTTCAGGGACAGAGGGAGTA

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