Plant MITE

SE2850075

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9080
Sorghum bicolor
SE2850075
PIF/harbinger
To17
chromosome_4:56702847-56702978
TAA
AGGGCCCGTTCG

Secondary structure and sequence

TSD TIR

5'

3'

TA            TTTG   GG  ---      CTCT    AT       G   -  TT       TAA
  AGGGCCCGTTCG    AAG  GA   TTGGTT    GGAA  ATTCTAG TGG AA  CTTATTC   
  ||||||||||||    |||  ||   ||||||    ||||  ||||||| ||| ||  |||||||    
  TCCCGGGCAAGC    TTC  CT   GACCGG    CCTT  TAAGGTC ACT TT  GGATAAG   
AA            -CAA   AA  TTA      ---C    AT       G   G  TT       TTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2850075

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2850075