Plant MITE

SE2850076

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9081
Sorghum bicolor
SE2850076
PIF/harbinger
To1
chromosome_1:3139161-3139408
TTA
AGGGCTTGTTTAGATGCAAAAACTTTTTGAATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT   G              ---       TTT       GACACCGT   ACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGGAGTAACTAGACTTAAAAGATTCGTCTCGCGATTTACAGACA
  AGG CTTGTTTAGATGCA   AAAACTT   GAATTTT        AGC                                                                               
  ||| ||||||||||||||   |||||||   |||||||        |||                                                                               A
  TCC GAACAAATCTATGT   TTTTGGG   TTTGAAA        TGT                                                                               
AT   G              GGT       --T       --------   TCTAAGGAGTAGTGTAGCTTAGAACGCCATGTACATACCTCATAATTTATATCTATTTTTATTTTTGATTAATGTGTCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850076

TTAGGGCTTGTTTAGATGCAAAAACTTTTTGAATTTTGACACCGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGGAGTAACTAGACTTAAAAGATTCGTCTCGCGATTTACAGACAAACTGTGTAATTAGTTTTTATTTTTATCTATATTTAATACTCCATACATGTACCGCAAGATTCGATGTGATGAGGAATCTTGTAAAGTTTTGGGTTTTTGGTGTATCTAAACAAGGCCTTA

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