Plant MITE

SE2850079

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9084
Sorghum bicolor
SE2850079
PIF/harbinger
To20
chromosome_9:8100447-8100923
TAA
AGAGCAACTCTAG

Secondary structure and sequence

TSD TIR

5'

3'

TA             TAGTAGCCCCAAAA              TT     G   -   -----------C    --   TTTTTGGGGCTTTATTTTTTTTTTGCTTTAACTCCAACAGCAGCACCTAATTTAAGGCCCCAAACCTATTCCGATAGAGAATGATAGAAGGGACCCACTCATCATTGTTTTTTTCTTCTTCCTGTTTTTTCTTCCTTTCGACACGGACACAATTAGAGGATTGATCCGACGACC
  AGAGCAACTCTAG              CAAGACCCCTACTT  AATTT GGT GCT            TCCT  TAC                                                                                                                                                                              
  |||||||||||||              ||||||||||||||  ||||| ||| |||            ||||  |||                                                                                                                                                                               
  TCTCGTTGAGGTC              GTTCTGGGGATGAA  TTAGG TTA CGA            GGTC  ATT                                                                                                                                                                              
AA             --------------              -T     G   T   TTTATACTAACA    CG   TTTGTAATGAGATCATCCGGGGATGAGGTCTGGGATATAAACCTACCCGACGGTATATGGAGAGGGTCTGGGGTAAGACCAACCGGGTTGTCCTGTCGGGGTAGGAGGTAGTGCACAAGATCGGGGTCGCGCGCGAGGGGGAGAGAGAAGAGAACGTGCACGTGCTGTAGTATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850079

TAAGAGCAACTCTAGTAGTAGCCCCAAAACAAGACCCCTACTTTTAATTTGGGTGCTCTCCTTACTTTTTGGGGCTTTATTTTTTTTTTGCTTTAACTCCAACAGCAGCACCTAATTTAAGGCCCCAAACCTATTCCGATAGAGAATGATAGAAGGGACCCACTCATCATTGTTTTTTTCTTCTTCCTGTTTTTTCTTCCTTTCGACACGGACACAATTAGAGGATTGATCCGACGACCGTATGATGTCGTGCACGTGCAAGAGAAGAGAGAGGGGGAGCGCGCGCTGGGGCTAGAACACGTGATGGAGGATGGGGCTGTCCTGTTGGGCCAACCAGAATGGGGTCTGGGAGAGGTATATGGCAGCCCATCCAAATATAGGGTCTGGAGTAGGGGCCTACTAGAGTAATGTTTTTAGCCTGGACAATCATATTTAGCTATTGGGATTTAAGTAGGGGTCTTGCTGGAGTTGCTCTAA

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