SE2810081

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9086
  • Sorghum bicolor
  • SE2810081
  • Tc1/Mariner
  • St9
  • chromosome_7:49911921-49912184
  • TA
  • TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGTCAAACTTTTTAAAGTTTGACTAAATTTATATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                              G     - -      AA           T     T  --TAAA   ATTATTATTATAATACTAACTAAATATCATTAGATTCTTTCTT
TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGA TCAAA C TTTTTA  GTTTGACTAAA TTATA GA      ATA                                           
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||  ||||||||||| ||||| ||      |||                                            
ATGAGGGAGGTAGGGTTTAACATTCAGTAAGGTTCTTAGAACCTCT AGTTT G AAAAGT  CAAACTGATTT AATAT CT      ATG                                           
                                              A     C T      -G           T     -  CACTTT   ATTCTAAACATTGTATTTCACTCATATGATACTTTTATATTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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