SE2850082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9087
  • Sorghum bicolor
  • SE2850082
  • PIF/harbinger
  • To4
  • chromosome_1:52448445-52448700
  • TTA
  • AGGCCTTATTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT        -----     TTATACCCAAA              -----        CTCATCACACATCGAATCTTGTGGTACATGCATGGAGCATTAAATATAGATAAAAAAATAACTAATTACACAGTTTACCT
  AGGCCTTA     TTTAG           ATCCAAAAACTTTT     CAAGATTT                                                                                
  ||||||||     |||||           ||||||||||||||     ||||||||                                                                                G
  TCCGGAAT     AAATC           TAGGTTTTTGAAAA     ATCTCGTA                                                                                
AT        CGAAC     -----------              ACCTA        AATATCGTGAAAGCAAACATAAAGTGTTAATAATAGATTGAAACCTGATTGATCTGAGTTTTCTAAGCAGAGTGTTTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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