Plant MITE

SE2810084

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9089
Sorghum bicolor
SE2810084
Tc1/Mariner
St10
chromosome_2:38307589-38307849
TA
TACTCCCTCCGTCCGCAAATAAATGCATATCTCGCATCCCGAGGAGTCAAACTTTTTTAAGTTTGACTAGAAATATATCAAATAATATCAATATTTGT

Secondary structure and sequence

TSD TIR

5'

3'

                      A           CA        A       T                  A      C   TA    C         ATC   AAATTAGTATATTATGAAAGTATATTT
TACTCCCTCCGTCCGCAAATAA TGCATATCTCG  TCCCGAGG GTCAAAC TTTTTAAGTTTGACTAGA ATATAT AAA  ATAT AATATTTGT   TAC                           
|||||||||||||||||||||| |||||||||||  |||||||| ||||||| |||||||||||||||||| |||||| |||  |||| |||||||||   |||                            
ATGAGGGAGGCAGGTGTTTATT ACGTGTAGAGC  AGGGCTCC CAGTTTG AAAAATTTAAACTGATTT TATATA TTT  TATG TTATAAATA   ATA                           
                      C           AA        G       T                  A      T   TA    A         -AC   CATTATATATAGTAATCTAACTCGTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810084

TACTCCCTCCGTCCGCAAATAAATGCATATCTCGCATCCCGAGGAGTCAAACTTTTTTAAGTTTGACTAGAAATATATCAAATAATATCAATATTTGTATCTACAAATTAGTATATTATGAAAGTATATTTCATGCTCAATCTAATGATATATATTACATACAATAAATATTAGTATATTTTTATATATATTTAGTCAAATTTAAAAATGTTTGACGCCTCGGGAAACGAGATGTGCACTTATTTGTGGACGGAGGGAGTA

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