SE2850092

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9097
  • Sorghum bicolor
  • SE2850092
  • PIF/harbinger
  • To19
  • chromosome_7:18170648-18170848
  • TTA
  • AGGGGGTGTTTGGGACTGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                     CACAAA   CACCATGGAGCAGCTCCACGAAAAACTAGAGTTTGTGGAGTACCTCTTTAGGTGCTCTCATAACTCCACCC
  AGGGGGTGTTTGGGACTGCTC      CTC                                                                       
  |||||||||||||||||||||      |||                                                                        
  TCCCCCACAAACCCTGACGAG      CGA                                                                       
AT                     -----A   GGTGCAAAAGTCGAGGCGAGGTGCAAAAAATCGGTTTGCCAAAGTCGAGGTGCGTGAATCAAGCTCTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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