SE2830095

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9100
  • Sorghum bicolor
  • SE2830095
  • hAT
  • Hat9
  • chromosome_2:8742478-8742753
  • GCAAGTGC
  • GCAAGTGCCAGTGGCGGATCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
   AG     G        C   AAACGGATCAA        CTAAATAACATAGACTAATTTTTTTTTTCTCAATGCAGTACACTAATGGATATAGCTAAGATTGATAATTTAATATTGATTCAAAGTGTTCAAAGACAAAG
GCA  TGCCA TGGCGGAT CAG           GAGGAGGG                                                                                                     
|||  ||||| |||||||| |||           ||||||||                                                                                                     A
CGT  ACGGT ACCGCCTA GTC           CCCCCGAC                                                                                                     
   GA     A        C   -----------        CCACCGACGTCGGGGGAGAACCTGAGTTTTTACAAAATTATCCAAAAGAAAAAACGTTTTCTAAAGTATATAAACCATAAAAAGATACAAATAAGATACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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