Plant MITE

SE2820098

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9103
Sorghum bicolor
SE2820098
Mutator
M3
chromosome_10:53180693-53180962
TAATTATAT
TAATTATATGGCAACGTATCATATGCAACCCAACTTCGTGTGCAATCTATGCAACCACCAATTAAAGCCACAGGATCTAGATGCAACGTCTGAGATTTTTTTCACTTAAACCCCTCCACCTGTGGGTT

Secondary structure and sequence

TSD TIR

5'

3'

         TAT  C        ATA      C  A                     C          A      G         GC                 T           C    C   --------      TAA
   TAATTA   GG AACGTATC   TGCAAC CA CTTCGTGTGCAATCTATGCAA CACCAATTAA GCCACA GATCTAGAT  AACGTCTGAGATTTTTT CACTTAAACCC TCCA CTG        TGGGTT   
   ||||||   || ||||||||   |||||| || ||||||||||||||||||||| |||||||||| |||||| |||||||||  ||||||||||||||||| ||||||||||| |||| |||        ||||||   A
   ATTAAT   CC TTGTATAG   ACGTTG GT GAAGCACACGTTGGATACGTT GTGGTTAATT TGGTGT CTAGATCTA  TTGCAGACTCTAAAAAA GTGAATTTGGG GGGT GAC        GCCCAA   
TAT      --C  -        GAC      T  C                     A          C      A         GA                 -           A    A   CTATGTGT      TTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2820098

TAATTATATGGCAACGTATCATATGCAACCCAACTTCGTGTGCAATCTATGCAACCACCAATTAAAGCCACAGGATCTAGATGCAACGTCTGAGATTTTTTTCACTTAAACCCCTCCACCTGTGGGTTTAAATTTAACCCGTGTGTATCCAGATGGGAGGGTTTAAGTGAAAAAATCTCAGACGTTAGATCTAGATCATGTGGTCTTAATTGGTGATTGCATAGGTTGCACACGAAGCTGTGTTGCACAGGATATGTTCCCTAATTATAT

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