Plant MITE

SE2850105

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9110
Sorghum bicolor
SE2850105
PIF/harbinger
To22
chromosome_1:71870472-71870709
TAA
AGAGCAAGT

Secondary structure and sequence

TSD TIR

5'

3'

TA         --------------ATTA    G --   GTAAGCTGGCTAAATGCTGATGTGGAGGAGAGAAGGGAGGAGAGAGAGGAGAAGCAGGCTGTAAGGTTACAGCCAGCTTAGACACAA
  AGAGCAAGT                  TGGT G  GCT                                                                                       
  |||||||||                  |||| |  |||                                                                                       A
  TCTCGTTCA                  ACGA C  ACA                                                                                       
AA         AATTATTATGTCAGGTGA    - CA   TTCCAAGGAATGTCGGGTGGGTATGTTATCAATCGATAAGTGATAATTATGTACCGGGTGAATAGAGAGAGTGTTTCAAAGAACCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850105

TAAGAGCAAGTATTATGGTGGGCTGTAAGCTGGCTAAATGCTGATGTGGAGGAGAGAAGGGAGGAGAGAGAGGAGAAGCAGGCTGTAAGGTTACAGCCAGCTTAGACACAAAAACCAAGAAACTTTGTGAGAGAGATAAGTGGGCCATGTATTAATAGTGAATAGCTAACTATTGTATGGGTGGGCTGTAAGGAACCTTACAACCAGCAAGTGGACTGTATTATTAAACTTGCTCTAA

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