SE2820114

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9119
  • Sorghum bicolor
  • SE2820114
  • Mutator
  • M5
  • chromosome_1:26063441-26064000
  • TATAAAAAA
  • AGAGAGATTTACTTGTGTGGCCCTAAAAAAATACCTCTTCCTTATATGGCCTCTTTTTTTTGAACTTCCTTCTATGGCC

Secondary structure and sequence

TSD    TIR
5'



3'
TATAAAAA                        -AA           T     A                ---                   CTCAAAC           G        G      A                             C          A         A          G   T       A                 -C      ATAAATGATTTT      ------      -- CGTATTGTACTGTGATGCTGTCTAAATATTTATTGTGA
        AGAGAGATTTACTTGTGTGGCCCT   AAAAATACCTC TCCTT TATGGCCTCTTTTTTT   TGAACTTCCTTCTATGGCC       GAATTTTCATT CTTCTATG CCTTCC TCCGTTTTTAGCACTTAACGGTGTTAAGT GAGGGTAAAA GACCATAAT CCCCTAGCAT AAA TTTTTTC CAAAGTTTGGTTTGTTT  TTGTAT            TTTGAG      CACGTA  C                                      
        ||||||||||||||||||||||||   ||||||||||| ||||| ||||||||||||||||   |||||||||||||||||||       ||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| ||| ||||||| |||||||||||||||||  ||||||            ||||||      ||||||  |                                      T
        TCTCTCTAAATGAACATACCGGGA   TTTTTATGGAG AGGAA ATACCGGAGAAAAAAA   ACTTGAAGGAAGATACCGG       CTTGAAAGTAA GAAGATAC GGAAGG AGGCAAAAGTCGTGAATTGCCACAATTCA CTCCCATTTT CTGGTATTA GGGGATCGTA TTT AAAAAAG GTTTCAAACCAAACAAA  AACATA            AAACTC      ATTTGT  A                                      
AAAAAATA                        GTC           T     C                AAA                   -------           G        G      C                             C          -         C          G   T       C                 AA      ------------      ATTATC      TT TTTAACTGTTAAATATGTAATATTGTCATGTATAAACC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End