SE2850115

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9120
  • Sorghum bicolor
  • SE2850115
  • PIF/harbinger
  • To25
  • chromosome_9:48969130-48969261
  • TAA
  • GGCCTGGTTCGTTTGGGGTGGATTGAGGGCATCAATTAATCCAGCTGAGCACTACTA

Secondary structure and sequence

TSD    TIR
5'



3' 
  TAA    TG         --G  T    T AG   ATC   TAA         ----   CTA   CTA
     GGCC  GTTCGTTTG   GG GGAT G  GGC   AAT   TCCAGCTGA    GCA   CTA   
     ||||  |||||||||   || |||| |  |||   |||   |||||||||    |||   |||   T
     CCGG  CAAGCAAAT   CC CTTA C  CCG   TTA   AGGTCGACT    TGT   GAT   
AATCC    --         GAA  -    T CA   ACC   TCA         TTAT   TCA   AAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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