SE2850122

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9127
  • Sorghum bicolor
  • SE2850122
  • PIF/harbinger
  • To20
  • chromosome_9:576531-577112
  • TTA
  • AGAGCAACTCCAGCAGGGCCCCTACTTGAGCCCCTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TT                -     - --T  TT A   C    AGCTAA  A       -  AGGCAAAAAACAG   TCCAGCAGGGCCCCTACCAGAGCCCCCAATTTGGGGTGGGCACCCAAATCTTCTCTGCAGACCCCATTCCTGTTGGCCCAACAGCCCAGCCCCCATCCTGCGTGGTGTGGCAATTACCTCCTCACACCGAACAAACGCAGCTTCGCCCATCTCCCTCCGGCGCTAATTTTCACTACCGCGCTCCCTCCCTCCACCTCCGACCTCCACCGTTGGGCCTCGCCGC
  AGAGCAACTCCAGCAG GGCCC C   AC  G GCC CTAT      AT TGGGTGC CC             TAC                                                                                                                                                                                                                               
  |||||||||||||||| ||||| |   ||  | ||| ||||      || ||||||| ||             |||                                                                                                                                                                                                                                
  TCTCGTTGAGGTCGTC TCGGG G   TG  C CGG GATG      TA ACCCACG GG             GGG                                                                                                                                                                                                                               
AT                A     A TTT  TC -   A    -AAAAG  A       A  -------------   ATGAAAACCCACAGATTTTAAAAACGAAGGTGAGGTTGTCATGGTGGATTTACTTCCGGGGGTTTAGGTTTGACCGTCTGTTACTGTACACCCTGGGTGAGCAGTAACCCAGTTTGTAAAATGATGGCGTACTGGTGTTCTTCGCCTCCGAGCTGCGAGCGCTATTGGTACCGATCCCGACGAGGGCGAGTAGCTCCTCTCCGGTGAGAGTGGCCTTCCCTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End