SE2850123

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9128
  • Sorghum bicolor
  • SE2850123
  • PIF/harbinger
  • To1
  • chromosome_1:17330750-17330998
  • TTA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3'
TT             TTCACCCCAAAAACAAAAAACTTTT        CCCGTCACATTGAATCTTGCGACACATGCATGGAGCATTAAATATAGATGAAAACAAAAACTAATTGCACAGTTTATCTGTAAATCGCG
  AGGCCTTGTTTAG                         CAAGATTC                                                                                         
  |||||||||||||                         ||||||||                                                                                          
  TCCGGAACAAATC                         TAGGTTTT                                                                                         
AT             -------------------------        AAAAAAATCTAAAACTGTGACATCGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTACCTCATTGATCCGAATTTTCTAAGCAGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End