Plant MITE

SE2810124

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9129
Sorghum bicolor
SE2810124
Tc1/Mariner
St12
chromosome_1:73539945-73540180
TA
TACTCCCTCCATCCATTTATT

Secondary structure and sequence

TSD TIR

5'

3'

                     TATC C          -G      GCGCAGTGACCAAGGAGAAATTAATTTGGCCAGTGAAAGGAGTTGCATGCAGACGGTTGAATTAATTAGACCAGT
TACTCCCTCCATCCATTTATT    G AGTCATTTTA  GGTCAT                                                                           
|||||||||||||||||||||    | ||||||||||  ||||||                                                                           G
ATGAGGGAGGTAGGTAAATAA    C TCAGTAGAAT  CTTTTT                                                                           
                     ---- C          GG      TTTAAGAGGTTCTTAGCCTCAGTAGATCGATCCCTGGTGATAAAAGTGGAAAAGGGTTCGTGTACGCCGAGGAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810124

TACTCCCTCCATCCATTTATTTATCGCAGTCATTTTAGGGTCATGCGCAGTGACCAAGGAGAAATTAATTTGGCCAGTGAAAGGAGTTGCATGCAGACGGTTGAATTAATTAGACCAGTGAGAGGAGCCGCATGTGCTTGGGAAAAGGTGAAAATAGTGGTCCCTAGCTAGATGACTCCGATTCTTGGAGAATTTTTTTTCGGTAAGATGACTCCAATAAATGGATGGAGGGAGTA

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