Plant MITE

SE2850128

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9133
Sorghum bicolor
SE2850128
PIF/harbinger
To2
chromosome_1:60031260-60031506
CTG
GGGCCTTGTTTAGTTCAAAAAAATTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

CT                -    AAA          TTTTCAGATTCCC    ACATCGAAT   --  GA GTATGCATGAAGTAATAAATATAGACGAAAATAAAAACTAATTACACAGTTTGGTCGGAA
  GGGCCTTGTTTAGTTC AAAA   TTTGCAAAAT             CGTC         CTT  TA  C                                                            
  |||||||||||||||| ||||   ||||||||||             ||||         |||  ||  |                                                            T
  CCCGGAACAAATCAAG TTTT   AAACGTTTTA             TGGT         TAA  CA  A                                                            
GT                G    ATA          ----CACTTATCA    ---------   AG  -- ACATAAACTGTTTATAACAGGTTAGTATCTGATTGATCCGAGTTTTCTAAGCAGAGCAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850128

CTGGGCCTTGTTTAGTTCAAAAAAATTTGCAAAATTTTTCAGATTCCCCGTCACATCGAATCTTTAGACGTATGCATGAAGTAATAAATATAGACGAAAATAAAAACTAATTACACAGTTTGGTCGGAATTGACGAGACGAATCTTTTGAGCCTAGTTAGTCTATGATTGGACAATATTTGTCAAATACAAACGAAATTGGTACTATTCACATTTTGCAAAATATTTTGGAACTAAACAAGGCCCTG

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