Plant MITE

SE2850134

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9139
Sorghum bicolor
SE2850134
PIF/harbinger
To1
chromosome_2:50808389-50808626
TTA
AGGCCTTGTTTAGTTCCCAAAATTTTTCAAGATTTC

Secondary structure and sequence

TSD TIR

5'

3'

TT               -CCC         CAA      C    ACATCGAATCTTGCGGCACATGCATGAAGTATTAAATATAGACGAAAACAAAAACTAATTACGCAGTTTACCTGTAA
  AGGCCTTGTTTAGTT    AAAATTTTT   GATTTC CGTC                                                                             
  |||||||||||||||    |||||||||   |||||| ||||                                                                              
  TCCGGAACAAATCAA    TTTTAAAAA   CTAAAG CGAT                                                                             
AT               ACCC         --C      -    GACATCGTGAAAGCAAACAAACACCGTTTATAATAAGTTAGTATCTGATTGATCCTAGTTTTCTAAGCAGAGCGCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850134

TTAGGCCTTGTTTAGTTCCCAAAATTTTTCAAGATTTCCCGTCACATCGAATCTTGCGGCACATGCATGAAGTATTAAATATAGACGAAAACAAAAACTAATTACGCAGTTTACCTGTAAATCGCGAGACGAATCTTTTGATCCTAGTTAGTCTATGATTGAATAATATTTGCCACAAACAAACGAAAGTGCTACAGTAGCGAAATCCAAAAATTTTCCCAAACTAAACAAGGCCTTA

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