SE2850137

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9142
  • Sorghum bicolor
  • SE2850137
  • PIF/harbinger
  • To4
  • chromosome_5:17733501-17733736
  • TTA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               CCTTTTTTTTCAAA    CTCATCACATCGAATCTTGTGGCACATGCATGAAGCATTAAATATAGATAAAAAAGATAACTAATTGCACAGTTTACCTGTAATTTGCA
  AGGCCTTGTTTAGTT              ATTC                                                                                         
  |||||||||||||||              ||||                                                                                         A
  TCCGGAACAAATCAA              CGCT                                                                                         
AT               -------------A    TTTAAAAACACAAAGCGATAACATCGTGGAAGTCGAAATAATCTGTTAATAATAAATTAATATCTGATTGATCCGAGTTTTCTAAACAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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