SE2850140

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9145
  • Sorghum bicolor
  • SE2850140
  • PIF/harbinger
  • To2
  • chromosome_6:54770200-54770448
  • TCA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TC            G  CCTTG  --    TTTTTTCGCGACACTGTAGCACTTTCGTTTGTTTGTAATAATTATTATCTAATCATGGACTAACTAGGCTCAAAAGATTTGTCTCATAAATTTCGACC
  AGGCCTTGTTTA TT     GC  GAAA                                                                                                  
  |||||||||||| ||     ||  ||||                                                                                                   
  TCCGGAACAAAT AA     AG  GGTT                                                                                                  
AC            G  -----  TG    TTAGGTTTTTGAAAAATTGTAAGAGACAGTGTAGCTTAGAAATATGTGTACGTATCTCATAATTTATATTTGTTTTTATTTTTGATTAACGTGTCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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