Plant MITE

SE2850142

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9147
Sorghum bicolor
SE2850142
PIF/harbinger
To11
chromosome_6:2393852-2394089
TAA
TAAGGCCTTGTTTAGTTG

Secondary structure and sequence

TSD TIR

5'

3'

      CCT          CATC            CC   T  C  ----------A  GA  GTTTAGACACATGCATGGAGTACTAAATATAGACTATTTACGGAACTAAAAATACAGCTAGAGA
 TAAGG   TGTTTAGTTG    TGTTAAAGTTTA  ACA GT AC           TC  AT                                                                
 |||||   ||||||||||    ||||||||||||  ||| || ||           ||  ||                                                                G
 ATTCC   ACAAATCAAC    ACAATTTCAAAT  TGT CA TG           AA  CA                                                                
A     -CC          ACTA            --   C  -  ACATCGTAAAA  --  AAATAAACTGTTAATCACAGGTTAATACCTGATTGATCCGAGTTTTCTAAGCAGAGTGTTTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850142

TAAGGCCTTGTTTAGTTGCATCTGTTAAAGTTTACCACATGTCACATCGAATGTTTAGACACATGCATGGAGTACTAAATATAGACTATTTACGGAACTAAAAATACAGCTAGAGAGTAATTTGTGAGACGAATCTTTTGAGCCTAGTTAGTCCATAATTGGACACTAATTGTCAAATAAAACAAAAAATGCTACAGTACCTGTTAAACTTTAACAATCACAACTAAACACCCCTTAA

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