Plant MITE

SE2850143

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9148
Sorghum bicolor
SE2850143
PIF/harbinger
To2
chromosome_1:66722867-66723115
TAG
GGGCCTTGTTTACTTCC

Secondary structure and sequence

TSD TIR

5'

3'

TA            C    ACCCAAAAT    AAATTTTTCAAGATTCCCCGTCACATCGAATCTTTAGACACATGCATGAAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTTGGT
  GGGCCTTGTTTA TTCC         CTCA                                                                                              
  |||||||||||| ||||         ||||                                                                                              C
  TCCGGAACAAAT AAGG         CTTT                                                                                              
GA            C    ----ACTTC    TTTAAAGCACTGTGACATCGTGAAAGCAAACAAACACCATTAATAACACGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850143

TAGGGCCTTGTTTACTTCCACCCAAAATCTCAAAATTTTTCAAGATTCCCCGTCACATCGAATCTTTAGACACATGCATGAAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTTGGTCGAAATTGACGAGACGAATCTTTTGAGCCTAGTTAGTCCATGATTGCACAATAATTACCACAAACAAACGAAAGTGCTACAGTGTCACGAAATTTTTTCCTTCAGGAACTAAACAAGGCCTAG

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