SE2810144

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9149
  • Sorghum bicolor
  • SE2810144
  • Tc1/Mariner
  • St6
  • chromosome_10:38290648-38290908
  • TA
  • TACTCCCTCTGTCCCTGAAAGCTTCAACTCCTAGA

Secondary structure and sequence

TSD    TIR
5'



3'
                             CC    ATCCA  CC            TT  G      --CAAC    T       A  ATC   ATCTATGACATAAAAT  G    T   GAAAATATATTATATGAT
TACTCCCTCTGTCCCTGAAAGCTTCAACT  TAGA     TG  AGTTAAACTTTT  AA TTTGAC      TTTA AGAAAAG GC   GAT                GA TATC TAT                  
|||||||||||||||||||||||||||||  ||||     ||  ||||||||||||  || ||||||      |||| ||||||| ||   |||                || |||| |||                  A
ATGAGGGAGACAGGGACTTTCGAAGTTGA  ATCT     AC  TCAGTTTGAAAA  TT AAACTG      AGAT TCTTTTT CG   CTA                TA TCAT GGT                  
                             AA    CAACA  AT            TT  G      ACTTAA    C       A  ATT   --------------AA  -    -   TTAATTATGGTAATCTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End