Plant MITE

SE2810148

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9153
Sorghum bicolor
SE2810148
Tc1/Mariner
St13
chromosome_6:53879801-53880040
TA
TACTCAATCCATCCCAAATTATAAGACGTTTGACTTTTTT

Secondary structure and sequence

TSD TIR

5'

3'

     AA                                 GATAA              C        --      T         --ATT   CTT   TT     GGC   GTTT   AAT
TACTC  TCCATCCCAAATTATAAGACGTTTGACTTTTTT     CAAGTTTGACCATT GTCTTATT  AAAAAA TTGTGCAAA     TCA   TTT  GTCGT   TTG    ATT   
|||||  |||||||||||||||||||||||||||||||||     |||||||||||||| ||||||||  |||||| |||||||||     |||   |||  |||||   |||    |||    
ATGAG  AGGTAGGGTTTAATATTCTGCAAACTGAAAAAA     GTTCAAACTGGTGA CAGAATAA  TTTTTT AATATGTTT     AGT   AAA  CAGTA   AAC    TGA   
     GG                                 ATGAA              A        GT      T         GTCTC   -TT   TT     -AT   ATCT   AAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810148

TACTCAATCCATCCCAAATTATAAGACGTTTGACTTTTTTGATAACAAGTTTGACCATTCGTCTTATTAAAAAATTTGTGCAAAATTTCACTTTTTTTGTCGTGGCTTGGTTTATTAATAAAAGTTCTACAATAATGACTTAAATTTGACTCTGTTTGTATAATTTTTTTTGAATAAGACAAGTGGTCAAACTTGAAGTAAAAAAAGTCAAACGTCTTATAATTTGGGATGGAGGGAGTA

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