Plant MITE

SE2850153

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9158
Sorghum bicolor
SE2850153
PIF/harbinger
To10
chromosome_1:68571598-68571856
AAG
A

Secondary structure and sequence

TSD TIR

5'

3'

               A    G  - A   TACTAATGTCTAAACCTAAAGACCTGGCTGTTGAATAAAACACTTGAGGCCTTGTTTGGATGTTGTCGGATTCACTTCAATCCATGTGTGTTGGTGTGGATTGGGGTGG
                AGGT AG A ATT                                                                                                             
                |||| || | |||                                                                                                              
                CCGA CA C TTG                                                                                                             
AAAGTCCCAACCGAAC    -  C A   TATTTAGGACCAAGCCCAAACCTGTGTTGAGTCCGGAACAAACCTACATCAGCCTAAGTGTAGTTAAGTGTACACAACTCCACCTAACCTCACCTTGAACTTGATTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850153

AAGGTGAGAAATTTACTAATGTCTAAACCTAAAGACCTGGCTGTTGAATAAAACACTTGAGGCCTTGTTTGGATGTTGTCGGATTCACTTCAATCCATGTGTGTTGGTGTGGATTGGGGTGGAATTTAGTTCAAGTTCCACTCCAATCCACCTCAACACATGTGAATTGATGTGAATCCGACTACATCCAAACAAGGCCTGAGTTGTGTCCAAACCCGAACCAGGATTTATGTTACCACAGCCCAAGCCAACCCTGAAA

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