SE2810155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9160
  • Sorghum bicolor
  • SE2810155
  • Tc1/Mariner
  • St9
  • chromosome_4:55099648-55099906
  • TA
  • TACTCCCTCCATTCCAAATTATAAGTCATTTTCAAGAATCTTGGAGGGTCAAAGCATCTTAGGTTTGACCAAAATTATAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                               T                      C                  A     -  GAAAATTACAAAG      -   ATCAA    GTATACTATGAAAATATAA
TACTCCCTCCATTCCAAATTATAAGTCATTT CAAGAATCTTGGAGGGTCAAAG ATCTTAGGTTTGACCAAA TTATA GA             ATTTAT AAC     ATAG                   
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| ||             |||||| |||     ||||                   T
ATGAGGGAGGTAGGGTTTAATATTCAGTAAG GTTCTTAGAACCTCTCAGTTTC TAGAGTTCAAACTGGTTT AATAT CT             TAAATA TTG     TTCT                   
                               -                      C                  A     A  -ATTCTATTATTA      C   ----A    TAACAATCTAAGAAGTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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