SE2850156

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9161
  • Sorghum bicolor
  • SE2850156
  • PIF/harbinger
  • To2
  • chromosome_5:1586718-1587296
  • TAG
  • GGGCCTTGTTTAGGCCTC

Secondary structure and sequence

TSD    TIR
5'



3'
TA             GCC  CACTT        -TTAA  CA  T    A       -   A          AC             A    AAAT                          ATC       A        A          C     A   -AGCCTT      TACAGTAACCAACATGTGCTAATGACAGATTAATTATGCTTAATAGATTTGTCTTACAGTTTTCTGACGAGCTATATAATTTATTTTTTTATTAGTTTCTAAAAACCCCTCCCGAC
  GGGCCTTGTTTAG   TC     AAAAATTT     TC  TC TATC AATCTTT GAC CATATATGAA  ATTAAATGTAGAT AAAA    AAACTAATTATGCAGTTTGGTTGAAA   GCGAGAC AATCTTTT AGCCTAGTTA TCCAT ATT       AAGTGC                                                                                                                    
  |||||||||||||   ||     ||||||||     ||  || |||| ||||||| ||| ||||||||||  ||||||||||||| ||||    ||||||||||||||||||||||||||   ||||||| |||||||| |||||||||| ||||| |||       ||||||                                                                                                                    A
  TCCGGAACAAATC   AG     TTTTTAAA     AG  AG GTAG TTAGAAA CTG GTATATACTT  TAATTTATATCTG TTTT    TTTGATTAATGTGTCAAATCAGCTTT   TGCTCTG TTAGAAAA TCGGATCAAT AGGTA TAA       TAAACA                                                                                                                    
GA             AAA  TTTTT        CTAAG  CC  T    C       T   C          CA             C    -ATT                          AAC       C        C          C     C   CCTATTA      GTTTATGTTTGCTTTTACGATGTCACAGCTAAAAGGTTTTTTTTTAAACCTTGATTCCGAGACAAATCTAACTCCTACTTTTAAAAAACCCAAAGTGTAGCCTACACAGCCTTCCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End