Plant MITE

SE2850168

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9173
Sorghum bicolor
SE2850168
PIF/harbinger
To2
chromosome_2:65559486-65559734
TTA
AGGCCTTGTTTAGTTCCAAATTTTTTTAA

Secondary structure and sequence

TSD TIR

5'

3'

TT                -------------    T        ---         AC  T GCACTTTCGTTTGTATTTGACAAATATTGTCCAATTATGAACTAATTATGCTCAAAAGATTCGTCTCGTCAA
  AGGCCTTGTTTAGTTC             CAAA TTTTTTAA   GAAATTGAT  TG A                                                                        
  ||||||||||||||||             |||| ||||||||   |||||||||  || |                                                                         
  TCCGGAACAAATCAAG             GTTT AAAAAGTT   GAGGTAGTG  TA G                                                                        
AT                AGATTTTTAAAAC    T        TAA         --  - CTTAGAAATCTGCATACATACTTCATAATTTATATCTATTTTTATTTTTGATTAACGTGTCAAACCAGCTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850168

TTAGGCCTTGTTTAGTTCCAAATTTTTTTAAGAAATTGATACTGTAGCACTTTCGTTTGTATTTGACAAATATTGTCCAATTATGAACTAATTATGCTCAAAAGATTCGTCTCGTCAATTTCGACCAAACTGTGCAATTAGTTTTTATTTTTATCTATATTTAATACTTCATACATACGTCTAAAGATTCGATGTGATGGAGAATTTGAAAAATTTTGCAAAATTTTTAGAGAACTAAACAAGGCCTTA

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