Plant MITE

SE2850171

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9176
Sorghum bicolor
SE2850171
PIF/harbinger
To33
chromosome_4:63222198-63222398
CTT
GGTAAAGTTTATTTTTCTCTTGAGGATATGTGCACTCACTCTCCTACCAATTGGATTTGCTTTGAGAAGTATGCAAACACACATCTCAATGCG

Secondary structure and sequence

TSD TIR

5'

3'

CTTCCAC   AAA    A    T         A       AC             A                     A                  T   AA
       GGT   GTTT TTTT CTCTTGAGG TATGTGC  TCACTCTCCTACC ATTGGATTTGCTTTGAGAAGT TGCAAACACACATCTCAA GCG  
       |||   |||| |||| ||||||||| |||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||   
       CCG   CAAA AAAA GGGAATTCC GTGTACG  AGTGAGAGGGTGG TAACCTAAGCGAAACTCTTCA ACGTTTGTGTGTAGAGTT CGT  
CTACCTT   --C    -    C         C       GA             G                     C                  T   CA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850171

CTTCCACGGTAAAGTTTATTTTTCTCTTGAGGATATGTGCACTCACTCTCCTACCAATTGGATTTGCTTTGAGAAGTATGCAAACACACATCTCAATGCGAAACTGCTTTGAGATGTGTGTTTGCACACTTCTCAAAGCGAATCCAATGGGTGGGAGAGTGAAGGCATGTGCCCTTAAGGGCAAAAAAACCGCCTTCCATC

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