SE2850174

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9179
  • Sorghum bicolor
  • SE2850174
  • PIF/harbinger
  • To2
  • chromosome_9:54883734-54883982
  • TGA
  • AGGCCTTGTTTAGTTCCAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TG                 -           C     CGACAC  T   A  TTC      AT   ACAAAAATTATCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCGACCA
  AGGCCTTGTTTAGTTCC AAAAAATTTTG AAAAT      TG AGC CT   GTTTGT  TTG                                                              
  ||||||||||||||||| ||||||||||| |||||      || ||| ||   ||||||  |||                                                               
  TCCGGAACAAATCAAGG TTTTTTAAAAC TTTTA      TC TAA GG   GGCAGT  AGC                                                              
AG                 G           A     -AAAAG  -   -  ---      GT   TTAGAAATCTGCGTACGTACCTCATAATTTATATCTACTTTTATTTTTGATTAACGTGTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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