SE2850175

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9180
  • Sorghum bicolor
  • SE2850175
  • PIF/harbinger
  • To34
  • chromosome_1:46346972-46347176
  • TTA
  • TAGGGCCTGTTTGGATACATAGCTAATTACTAGCTAGCTAAAAATTGGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
T                    --     A       --CTA               --TA  GCATCCAAACAAGAGAGCTAACAGGTGGGCTAATTTTTTAGCC
 TAGGGCCTGTTTGGATACAT  AGCTA TTACTAG     GCTAAAAATTGGCTC    GT                                           
 ||||||||||||||||||||  ||||| |||||||     |||||||||||||||    ||                                           A
 ATCCCGGACAAACCTATGTG  TCGAT AATGATC     CGATTTTTAATCGGG    AT                                           
A                    TA     C       AACCC               TTTA  CGATACCAAGCGATCGATCAACCGATTGTTGATCAACCTCTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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