SE2850181

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9186
  • Sorghum bicolor
  • SE2850181
  • PIF/harbinger
  • To4
  • chromosome_3:48999599-48999836
  • TAA
  • AGGCCTTGTTTAGTTGGCAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               G       ---TT      TT  GG     T   ACTTTCGTTTGTTTGTGGTAAATATTGTCCAATCATAGACTAATTAGGGTCAAAAGATTCATCTCGCGATTT
  AGGCCTTGTTTAGTT GCAAAAA     TTGGAT  TG  TACTG AGC                                                                        
  ||||||||||||||| |||||||     ||||||  ||  ||||| |||                                                                         
  TCCGGAACAAATCAA CGTTTTT     TTCTAA  GG  GGCAG TGT                                                                        
AA               G       TTAAG      --  --     -   AGCTTAAAACGCTGTGTATGTACCTCATAATTTAAATCTGTTTTTGTTTTTGATTAATGTGTCAAACGGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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