SE2850183

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9188
  • Sorghum bicolor
  • SE2850183
  • PIF/harbinger
  • To12
  • chromosome_3:9559256-9559502
  • TGA
  • AGGTCTTGTTTAGTTCACCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TG                A  -  --AAAACCAAAAA   TTC     TCCTCGTCACATCAAATTTTAGTCCACATGCATGGAGCATTAAATATAGATAAAAATAAAAACTTATTGCACAGTTTAT
  AGGTCTTGTTTAGTTC CC CA             CTT   AAGAT                                                                               
  |||||||||||||||| || ||             |||   |||||                                                                                
  TCCGGAACAAATCAAG GG GT             CTA   TTATA                                                                               
AG                -  A  GCTTTAAAAAACG   ---     TCGTAAAAATAAAAATAAACTATTTGTAATAGATTAATATCTCATTTATCCGAATTTTCTAAGCAGAGCGCTAAATGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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