Plant MITE

SE2850184

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9189
Sorghum bicolor
SE2850184
PIF/harbinger
To2
chromosome_8:43292674-43292922
TTG
GGGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT               CC       T         AATTT     TTC    --   ATCGAATCT     C  --- TGTA  AA    -   A   AGATAAAAATAATAATTAATTGCACAGTTTGCTTGTAA
  GGGCCTTGTTTAGTT  CAAAAAA TTTGCAAAA     TAGAT   CCGT  CAC         TGCAG GC   A    TG  GCAT TAA TAT                                      
  |||||||||||||||  ||||||| |||||||||     |||||   ||||  |||         ||||| ||   |    ||  |||| ||| |||                                      T
  TCCGGAACAAATCAA  GTTTTTT AAATGTTTT     ATCTG   GGCA  GTG         TAAAC AT   C    TG  TTTA AAC GGT                                      
GT               -A       T         -----     --T    TC   -----AAAG     -  AAA ----  --    T   A   TAATACTTGATTAATCCGAGTTTTCTAAACAGAGTGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850184

TTGGGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAAAATTTTAGATTTCCCGTCACATCGAATCTTGCAGCGCATGTATGAAGCATTAAATATAGATAAAAATAATAATTAATTGCACAGTTTGCTTGTAATTTGTGAGACAAATCTTTTGAGCCTAATTAGTTCATAATTGGACAATATTTGTCAAATACAAATGAAAGTGCTACGGTGTCTATTTTGTAAATTTTTTTGAAACTAAACAAGGCCTTG

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