Plant MITE

SE2810186

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9191
Sorghum bicolor
SE2810186
Tc1/Mariner
St9
chromosome_6:52300524-52300787
TA
TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGTCAAAGCATTTTCACGTTTGACCAAAATTATA

Secondary structure and sequence

TSD TIR

5'

3'

                                                    G A     -AC           A     AAGAGAA     AAG    GTAACGTAAAGTGAGTATACTGTGAAAATATAATTAAG
TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGTCAAA C TTTTC   GTTTGACCAAA TTATA       ATACT   ATTT                                      
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||   ||||||||||| |||||       |||||   ||||                                      A
ATGAGGGAGGTAGGGTTTAACATTCAGTAAGGTTCTTAGAACCTCTCAGTTT G AAAAG   CAAACTGGTTT AATAT       ACTAT   TATT                                      
                                                    - -     ATT           A     -------     -TT    AATAATAATACTATGGTTGATTTATAATAATCTAAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810186

TACTCCCTCCATCCCAAATTGTAAGTCATTCCAAGAATCTTGGAGAGTCAAAGCATTTTCACGTTTGACCAAAATTATAAAGAGAAATACTAAGATTTGTAACGTAAAGTGAGTATACTGTGAAAATATAATTAAGAAAGAATCTAATAATATTTAGTTGGTATCATAATAATAATTATTTTATCATATAAATTTGGTCAAACTTAGAAAAGTTTGACTCTCCAAGATTCTTGGAATGACTTACAATTTGGGATGGAGGGAGTA

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