SE2810187

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9192
  • Sorghum bicolor
  • SE2810187
  • Tc1/Mariner
  • St15
  • chromosome_4:5212017-5212276
  • TA
  • TACTCCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
         CATC              G      A      C   ATA    A    T   GC       A      G     AAC     TA    C  C           -----------------        AA
TACTCCCTC    CCAAAATAAGTGAT TTTTAG TTTGTC TAG   AAAC ATTT AAG  TGGCCAA TTTATA GAAAG   ATTAA  TTTA GA ACCGAATAGGT                 AGAATATG  
|||||||||    |||||||||||||| |||||| |||||| |||   |||| |||| |||  ||||||| |||||| |||||   |||||  |||| || |||||||||||                 ||||||||   
ATGAGGGAG    GGTTTTATTCACTA AAAATC AAGTAG ATT   TTTG TAAA TTC  ACCGGTT AAATAT TTTTT   TGATT  AAAT CT TGGTTTATTCA                 TTTTATAT  
         -CAA              G      A      A   CAG    G    T   AA       C      G     CCA     CA    A  A           CAAAAGTCTAAATAGTA        AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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