Plant MITE

SE2830191

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9196
Sorghum bicolor
SE2830191
hAT
Hat16
chromosome_6:47742901-47743429
ATTAGTTA
ATTAGTTATATAGATGGCCATCGGGTCGTGCCGGCCCGGCCCGGCGGCC

Secondary structure and sequence

TSD TIR

5'

3'

        TA             -   G     -  ----           G     G   CGCGCCGTGCCATCGTGCCGGCCGGGCCGTGCCATCACCGTGCCTCGTGCCGGGGGTATGGCCCAAGGCACGGCCCGCGGGCCGTCGGGCCGGCCCGAAGGCACGGTGGGCCACCGGGCCAAGGTCGTGCCAGGCCAGTAGCAGGCCTAATATTTTCTTTTTTTTGTTTAGAATTAACAAACTATATTTCTTAACAGGCCAATTAGGAT
  ATTAGT  TATAGATGGCCAT CGG TCGTG CC    GGCCCGGCCCG CGGCC GGC                                                                                                                                                                                                                 
  ||||||  ||||||||||||| ||| ||||| ||    ||||||||||| ||||| |||                                                                                                                                                                                                                  
  TGATTA  ATATCTACCGGTA GTC GGCAC GG    CCGGGCCGGGC GCCGG CCG                                                                                                                                                                                                                 
AT      --             C   G     C  GCAA           -     G   TAAAACCGGGCCGGGCTCGTGCCGTGCCGGGCTGATGATGGCCCGGGACCGGCCGTGCCGGACTCCGTGGCCCGGCACGGACCCGGTGGTGGCACCGGGCACCGTGCCGAGTCTGTGCCGGGCTGCCGGGCTACAAATTACAGTGTCATTTTTTTTATATCGAAAAATTAAATTTTTTTCTTTTACATCCAAACAACCAGGTAGGTAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830191

ATTAGTTATATAGATGGCCATCGGGTCGTGCCGGCCCGGCCCGGCGGCCGGGCCGCGCCGTGCCATCGTGCCGGCCGGGCCGTGCCATCACCGTGCCTCGTGCCGGGGGTATGGCCCAAGGCACGGCCCGCGGGCCGTCGGGCCGGCCCGAAGGCACGGTGGGCCACCGGGCCAAGGTCGTGCCAGGCCAGTAGCAGGCCTAATATTTTCTTTTTTTTGTTTAGAATTAACAAACTATATTTCTTAACAGGCCAATTAGGATGGATGGATGGACCAACAAACCTACATTTTCTTTTTTTAAATTAAAAAGCTATATTTTTTTTACTGTGACATTAAACATCGGGCCGTCGGGCCGTGTCTGAGCCGTGCCACGGGCCACGGTGGTGGCCCAGGCACGGCCCGGTGCCTCAGGCCGTGCCGGCCAGGGCCCGGTAGTAGTCGGGCCGTGCCGTGCTCGGGCCGGGCCAAAATGCCGGGCCGCGGGCCGGGCCAACGGGCCACGGGCTGCATGGCCATCTATAATTAGTTA

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