SE2830192

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9197
  • Sorghum bicolor
  • SE2830192
  • hAT
  • Hat17
  • chromosome_10:54813726-54813994
  • GGAGTGAC
  • CTAAGGATGAAAACGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GGAGTGA                    AAACAGTCGAAAACGGAATTACAATGTAGAAAACGAAAACGGTCGGTACGGAATATTTCTATATTTTAGCAATTAAAGAGTACAAAAAAAGAATAAAAATGGTTGTG
       CTAAGGATGAAAACGGTCGG                                                                                                           
       ||||||||||||||||||||                                                                                                           A
       GATTCCTACTTTTGCCTTGC                                                                                                           
CAGTGAG                    CTTTATAAGGCATGGCTGGCGAAAGCAAAAGATGTAATAGCAAAAGATATAATACTTTGACAAAAGCTTAAAATAGTTTGTATTTTTAAACAGTCAAAGTCAACCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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