SE2820193

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9198
  • Sorghum bicolor
  • SE2820193
  • Mutator
  • M5
  • chromosome_4:13442584-13443146
  • TTTGTTGAT
  • GAGAGATTTACTTGTATGGCCCTAAAAATGCCTATTCCTTGTATGGCTTCTTCTTTTTTGAACTTCCTTCTATAGCCCTCAAATGAACTTTCATTCCTTCTATGGCCTTCTGTCCATTTTCAGCACTTAACGGTGTTAAGTGGAGGATAAAAAGACCATAATGCCCGTGGCATCAATTTTTTTCGCAAAGTTTAGTTTGTTTCTTGTATATTTTGAGTA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTGTTGAT               A           --      A                  C                    A     C       C                      T    A                              A                   G      C  --                 A                --------         ATA   ---- ACAAA  -   ------ GACAATTTAGGCATTATAACACTACAT
         GAGAGATTTACTTGT TGGCCCTAAAA  ATGCCT TTCCTTGTATGGCTTCTT TTTTTTGAACTTCCTTCTAT GCCCT AAATGAA TTTCATTCCTTCTATGGCCTTC GTCC TTTTCAGCACTTAACGGTGTTAAGTGGAGG TAAAAAGACCATAATGCCC TGGCAT AA  TTTTTTTCGCAAAGTTT GTTTGTTTCTTGTATA        TTTTGAGTA   GTA    A     TA AAT      T                           
         ||||||||||||||| |||||||||||  |||||| |||||||||||||||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||  ||||||||||||||||| ||||||||||||||||        |||||||||   |||    |     || |||      |                           A
         CTCTCTAAATGAACA ACCGGGATTTT  TACGGA AAGGAACATACCGAAGAA AAAAAACTTGAAGGAAGATA TGGGA TTTACTT AAAGTAAGGAAGATACCGGAAG CAGG AAAAGTTGTGAATTGTCACAATTCACCTCC ATTTTTCTGGTGTTATGGG ACCGTA TT  AAAAAAAGTGTTTCAAA CAAACAAAGAACATAT        AAAACTCGT   ATG    G     AC CTA      G                           
TAGTTGTTT               C           TT      G                  -                    C     A       A                      T    C                              C                   G      C  TA                 C                TTACTTTA         -AT   ACAT -----  A   CAACAG TTTATAAATATAAATAATACTAGGTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End