SE2810194

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9199
  • Sorghum bicolor
  • SE2810194
  • Tc1/Mariner
  • St16
  • chromosome_4:47424226-47424369
  • TA
  • TACTCCCTCCGTTCCAAATTATAAGCCGCTTTGACTTTTTTGGTTCATCTATTTTGCTATCTAGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                         C                  T         -----   T      C TGAC
TACTCCCTCCGTTCCAAATTATAAG CGCTTTGACTTTTTTGGT CATCTATTT     TGC ATCTAG T    
||||||||||||||||||||||||| |||||||||||||||||| |||||||||     ||| |||||| |     
ATGAGGGAGGCAAGGTTTAATATTC GCGAAACTGAAAAAACCA GTAGGTAAA     ACG TAGATC A    
                         A                  T         ATAAT   -      T TAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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