Plant MITE

SE2810195

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9200
Sorghum bicolor
SE2810195
Tc1/Mariner
St17
chromosome_5:58909094-58909411
TA
TACTCCCTCCGTCTCAAGATACAAGGCGTAA

Secondary structure and sequence

TSD TIR

5'

3'

                A    C         CTGTTTT      CGTCCCATGATAGA       T   CTTAAACTTCCGCATGCAGCATCTAATGCAAGACTAAATAATCAATATTATCTCCCACACCAATGCATTTGTGCAGCATGCATGCACGAATGTTGGAAGCT
TACTCCCTCCGTCTCA GATA AAGGCGTAA       TTCCTC              AGGCGCC GGA                                                                                                     
|||||||||||||||| |||| |||||||||       ||||||              ||||||| |||                                                                                                      
ATGAGGGAGGCAGGGT CTAT TTCCGCGTT       AAGGAG              TTCGTGG TTC                                                                                                     
                A    C         -------      --------------       -   TGGTTCTTCGTTTAATTGAGGATGTGCAATTTCGATGAAAACAACAGGTAGGTTAAATTACGGTGTAACGTACGCACGTAACTCTTTCCCGCATCGGTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810195

TACTCCCTCCGTCTCAAGATACAAGGCGTAACTGTTTTTTCCTCCGTCCCATGATAGAAGGCGCCTGGACTTAAACTTCCGCATGCAGCATCTAATGCAAGACTAAATAATCAATATTATCTCCCACACCAATGCATTTGTGCAGCATGCATGCACGAATGTTGGAAGCTAATTGGCTACGCCCTTTCTCAATGCACGCATGCAATGTGGCATTAAATTGGATGGACAACAAAAGTAGCTTTAACGTGTAGGAGTTAATTTGCTTCTTGGTCTTGGTGCTTGAGGAATTGCGCCTTCTATCATGGGACGGAGGGAGTA

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