Plant MITE

SE2850196

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9201
Sorghum bicolor
SE2850196
PIF/harbinger
To23
chromosome_7:64074084-64074376
TTA
AGGGGGTGTTTAGTTCCCC

Secondary structure and sequence

TSD TIR

5'

3'

TT                   TTTTTT   -----   ---  AAATTT -----   TTTGGTCCATCATTTTGCAAAATGGAACTAAACACCATGCAATTTTTTTGGCAAAAAGGTGGTTATTCTCCATTTTGGATTTTGGCCTCAAGAGGCCA
  AGGGGGTGTTTAGTTCCCC      TCC     CAA   AA      G     GGT                                                                                                  
  |||||||||||||||||||      |||     |||   ||      |     |||                                                                                                   
  TCCCCCACAAATCAAGGGG      AGG     CGT   AC      G     TGG                                                                                                  
AT                   TATCTT   TTTTA   TTT  ------ GTTGA   AACCTCACTACTTTACGTTTTACGGTTTTAAAAGTCCCAGTACAAGGTAGGTTTTACGTCTTAAATAACGGGAGTACTCTCGGAGAAAAACCAAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850196

TTAGGGGGTGTTTAGTTCCCCTTTTTTTCCCAAAAAAATTTGGGTTTTGGTCCATCATTTTGCAAAATGGAACTAAACACCATGCAATTTTTTTGGCAAAAAGGTGGTTATTCTCCATTTTGGATTTTGGCCTCAAGAGGCCAAAAAAACCAAAAAGAGGCTCTCATGAGGGCAATAAATTCTGCATTTTGGATGGAACATGACCCTGAAAATTTTGGCATTTTGCATTTCATCACTCCAAGGTAGTTGGCATTTTGCATTTTGGATTCTATGGGGAACTAAACACCCCCTTA

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