Plant MITE

SE2850199

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9204
Sorghum bicolor
SE2850199
PIF/harbinger
To2
chromosome_1:9372364-9372612
TTA
AGGCCTTGTTTAGTTCCGAAAAATTTTGGGAAATCGACAC

Secondary structure and sequence

TSD TIR

5'

3'

TT                 G -         G     -CGA   ----  T   A - TTC   -    T ---  ACAAATATTATCCAATTATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTC
  AGGCCTTGTTTAGTTCC A AAAATTTTG GAAAT    CAC    TG AGC C T   GTT TGTA T   TG                                                         
  ||||||||||||||||| | ||||||||| |||||    |||    || ||| | |   ||| |||| |   ||                                                          
  TCCGGAACAAATCAAGG T TTTTAAAAC TTTTA    GTG    GG GCA G G   TAG TTAG A   CT                                                         
AT                 G C         G     AAAA   TAAG  -   - T ---   C    - AAT  GCGTACGTACTTCATAATTTATATCTACTTTTATTTTTAATTAACGTGTCAAACCAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850199

TTAGGCCTTGTTTAGTTCCGAAAAATTTTGGGAAATCGACACTGTAGCACTTTCGTTTGTATTTGACAAATATTATCCAATTATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCGACCAAACTGTGCAATTAATTTTTATTTTCATCTATATTTAATACTTCATGCATGCGTCTAAAGATTCGATGTGACGGGGAATGTGAAAAATTTTGCAAAATTTTCTGGGAACTAAACAAGGCCTTA

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