Plant MITE

SE2850204

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9209
Sorghum bicolor
SE2850204
PIF/harbinger
To15
chromosome_1:16501374-16502018
TAA
AGAGCATCTCAAACAGTTATGCAATTGGACTATGC

Secondary structure and sequence

TSD TIR

5'

3'

TA          A                  CTA   ----AT    GAAATTTGCCAAAAACTTTAAAAATTATTCTCCAATAGTTATGCATTTGACTTATGCATTTTGTCAAATTTAGCATTTGATGGACCAAACTTGGCATTTTTGCATAAGCACAATGGCTTGGCAAATTTGATATCCCGAGTTTCCTGGACTCCTTGTCGTGCGCGACCTCCCCACGCGCTGCGGTAGTTTCCCGCAATGACTCCTCTTCCCCGCGCGAACTCTTCTTTCCCGCGCGACGTGAACTCTGCGACCTGCGACTTCGTGGACTACTGGCGCA
  AGAGCATCTC AACAGTTATGCAATTGGA   TGC      TCTA                                                                                                                                                                                                                                                                                     
  |||||||||| ||||||||||||||||||   |||      ||||                                                                                                                                                                                                                                                                                     C
  TCTCGTAGAG TTGTCAATACGTTAACCT   ACG      AACC                                                                                                                                                                                                                                                                                     
AA          G                  TAA   ATAAAT    TTAAACGGTTCAGGGATTTGCAAAACGGTTTCTTTTTTATTGAGGTAGAGGTTCACAAACCGTAAAAACTGAACCGTAAAGGGTTTTATCACCTGGGTTAATAAAAACAGGCCCTGAAAAAAAACTAACCGCGCGAAGTGCGCTCTAAAAAGGAGACGCACCCTTAAAGGCAGCGGGCAGCGTCGATCAGGTGCTTCAGCGTTCAGTGGCGGCAAAGACACTTAGCGCCGGAGGGCCAGGCGGTCAGGTGCTTCAGCGTCAAGCGGTCTCAAGACAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850204

TAAGAGCATCTCAAACAGTTATGCAATTGGACTATGCATTCTAGAAATTTGCCAAAAACTTTAAAAATTATTCTCCAATAGTTATGCATTTGACTTATGCATTTTGTCAAATTTAGCATTTGATGGACCAAACTTGGCATTTTTGCATAAGCACAATGGCTTGGCAAATTTGATATCCCGAGTTTCCTGGACTCCTTGTCGTGCGCGACCTCCCCACGCGCTGCGGTAGTTTCCCGCAATGACTCCTCTTCCCCGCGCGAACTCTTCTTTCCCGCGCGACGTGAACTCTGCGACCTGCGACTTCGTGGACTACTGGCGCACGACAGAACTCTGGCGAACTGCGACTTCGTGGACTGGCGGACCGGGAGGCCGCGATTCACAGAAACGGCGGTGACTTGCGACTTCGTGGACTAGCTGCGACGGGCGACGGAAATTCCCACGCAGAGGAAAAATCTCGCGTGAAGCGCGCCAATCAAAAAAAAGTCCCGGACAAAAATAATTGGGTCCACTATTTTGGGAAATGCCAAGTCAAAAATGCCAAACACTTGGAGATGGAGTTATTTTTTCTTTGGCAAAACGTTTAGGGACTTGGCAAATTCCAATAAATAGCAAATTCCAATTGCATAACTGTTGGAGATGCTCTAA

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