SE2850210

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9215
  • Sorghum bicolor
  • SE2850210
  • PIF/harbinger
  • To19
  • chromosome_1:68703761-68703977
  • TAA
  • AGGGGGTGTTTGGCACTGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             C       CATAAACTC        ---AAA     CTATGGAGCAGCTCCACAAAAAACTGGAGTTCGTGGAGTACCTCTTTAGGTGCTCTCACAACT
  AGGGGGTGTTTGG ACTGCTC         TGCTCCAC      CTCCA                                                               
  ||||||||||||| |||||||         ||||||||      |||||                                                               C
  TCCCCCACAAACC TGACGAG         ACGAGGTG      GTCGA                                                               
AA             A       ---------        CAAAAA     GGCGAGGTACAAAAAATCGGTTTGTCAAAATCGAGGTGCGTGAGTCAAGCTCTTTTTTACCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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