SE2850212

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9217
  • Sorghum bicolor
  • SE2850212
  • PIF/harbinger
  • To1
  • chromosome_4:3155619-3155867
  • TAA
  • AGGCCTTGTTTAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               ACACCCAAAAACCCAAAACTTTA   -     CCCGTCACATCGAATCTTGCGGCATATGCATGAAGTATTAAATATAAATAAAAAGAATAACTAATTGCACAGTTTATCTGTAAATCA
  AGGCCTTGTTTAGAT                       CAA GATTC                                                                                       
  |||||||||||||||                       ||| |||||                                                                                       C
  TCCGGAACAAATCTA                       CGT TTTCA                                                                                       
AA               -----------------------   T     AAAACCTAAAACTATGACATCGTAAAAGCAAAAATAAACTGTTTGTAATAGATTAATACCTCATTGATCCGAATTTTCTAAGCAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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