SE2850213

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9218
  • Sorghum bicolor
  • SE2850213
  • PIF/harbinger
  • To2
  • chromosome_1:23298500-23298748
  • TTA
  • AGGCCTTGTTTAGTTCCAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                -                  CGACAC  T   A --- TTC  -    -   T  ---   AAATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCG
  AGGCCTTGTTTAGTTC CAAAAAATTTTGCAAAAT      TG AGC C   T   GT TTGT ATT GA   CAA                                                      
  |||||||||||||||| ||||||||||||||||||      || ||| |   |   || |||| ||| ||   |||                                                      A
  TCCGGAACAAATCAAG GTTTTTTAAAACGTTTTA      TC TAA G   T   AG GTAG TTA GA   CTG                                                      
AT                A                  -AAAAG  -   - AGG ---  T    C   -  AAT   CGTACGTACTTCATAATTTATATCTACTTTTATTTTTGATTAACGTGTTAAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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